This lesson is still being designed and assembled (Pre-Alpha version)

Curating for Reproducibility Workflows

This Library Carpentry lesson is the second in a series of lessons included in the Curating for Reproducibility Curriculum. Lesson 1: Introduction to Curating for Reproducibility established definitions of reproducibility, specified the standards by which reproducibility can be assessed, and described the role of the library and information science professional in supporting reproducibility.

This lesson operationalizes the concepts and standards around reproducibility by further exploring dimensions of data quality and translating them into discrete curation activities. These activities are described as part of the Data Quality Review (DQR) framework, which extends the typical data curation workflow to incorporate code review actions necessary for ensuring reproducibility.

The goal of this lesson is to give learners a deeper understanding of the relationship between reproducibility, quality standards, and curation, and to offer a adoptable framework for curation workflows that support reproducibility. This lesson is also designed to prepare learners for Lesson 3: Reproducibility Assessment, which offers an exciting opportunity for learners to apply their knowledge of reproducibility standards and the DQR framework to hands-on practice performing reproducibility assessment activities.

IMLS
The CuRe Curriculum was made possible in part by the Institute of Museum and Library Services under grants RE-87-17-0074-17 and RE-36-19-0081-19. The Institute of Museum and Library Services is the primary source of federal support for the nation’s libraries and museums. We advance, support, and empower America’s museums, libraries, and related organizations through grantmaking, research, and policy development. Our vision is a nation where museums and libraries work together to transform the lives of individuals and communities. To learn more, visit www.imls.gov and follow us on Facebook and Twitter.

Prerequisites

While this lesson has no prerequisites, completion of Lesson 1: Introduction to Curating for Reproducibility of the Curating for Reproducibility Curriculum is highly recommended prior to starting this lesson.

Schedule

Setup Download files required for the lesson
00:00 1. The Data Quality Review Framework What is data quality?
What is the relationship between curation and quality?
What is the Data Quality Review (DQR) Framework?
How does the DQR support scientific reproducibility?
00:00 2. File Review Why is file review important for reproducibility?
What curation activities are associated with file review?
00:00 3. Documentation Review Why is documentation important for reproducibility?
What types of documentation are necessary to support reproducibility?
What curation activities are associated with documentation review?
00:00 4. Data Review Why is data review important for reproducibility?
What curation activities are associated with data review?
00:00 5. Code Review Why is code review important for reproducibility?
What curation activities are associated with code review?
00:00 Finish

The actual schedule may vary slightly depending on the topics and exercises chosen by the instructor.